installation errors, Permission denied

[neogien]

&| Dear VASP users
I'm installing parallel version vasp4.6 on my linux P4 cluster computer.
Redhat linux and pgf90 compiler had supported and I successfully had installed BLACS and SCALAPACK.
Following errors are occured during vasp installation
I tried to change linux shell, but it was not solved.


./preprocess <base.F | /usr/bin/cpp -P -C -traditional >base.f90 -DMPI -DHOST=\"LinuxIFC\" -DIFC -Dkind8 -DNGZhalf -DCACHE_SIZE=4000 -DPGF90 -Davoidalloc -DMPI_BLOCK=500
/bin/sh: line 1: ./preprocess: Permission denied
mpif90 -O3 -c base.f90
./preprocess <mpi.F | /usr/bin/cpp -P -C -traditional >mpi.f90 -DMPI -DHOST=\"LinuxIFC\" -DIFC -Dkind8 -DNGZhalf -DCACHE_SIZE=4000 -DPGF90 -Davoidalloc -DMPI_BLOCK=500
/bin/sh: line 1: ./preprocess: Permission deniedmpif90 -O3 -c mpi.f90
./preprocess <smart_allocate.F | /usr/bin/cpp -P -C -traditional >smart_allocate.f90 -DMPI -DHOST=\"LinuxIFC\" -DIFC -Dkind8 -DNGZhalf -DCACHE_SIZE=4000 -DPGF90 -Davoidalloc -DMPI_BLOCK=500
/bin/sh: line 1: ./preprocess: Permission denied
mpif90 -O3 -c smart_allocate.f90
./preprocess <xml.F | /usr/bin/cpp -P -C -traditional >xml.f90 -DMPI -DHOST=\"LinuxIFC\" -DIFC -Dkind8 -DNGZhalf -DCACHE_SIZE=4000 -DPGF90 -Davoidalloc -DMPI_BLOCK=500
/bin/sh: line 1: ./preprocess: Permission denied
mpif90 -O3 -c xml.f90
./preprocess <constant.F | /usr/bin/cpp -P -C -traditional >constant.f90 -DMPI -DHOST=\"LinuxIFC\" -DIFC -Dkind8 -DNGZhalf -DCACHE_SIZE=4000 -DPGF90 -Davoidalloc -DMPI_BLOCK=500
/bin/sh: line 1: ./preprocess: Permission denied
mpif90 -O3 -c constant.f90
./preprocess <jacobi.F | /usr/bin/cpp -P -C -traditional >jacobi.f90 -DMPI -DHOST=\"LinuxIFC\" -DIFC -Dkind8 -DNGZhalf -DCACHE_SIZE=4000 -DPGF90 -Davoidalloc -DMPI_BLOCK=500
/bin/sh: line 1: ./preprocess: Permission denied
mpif90 -O3 -c jacobi.f90
./preprocess <main_mpi.F | /usr/bin/cpp -P -C -traditional >main_mpi.f90 -DMPI -DHOST=\"LinuxIFC\" -DIFC -Dkind8 -DNGZhalf -DCACHE_SIZE=4000 -DPGF90 -Davoidalloc -DMPI_BLOCK=500
/bin/sh: line 1: ./preprocess: Permission denied
.
.
.
mpif90 -O0 -c main.f90
rm -f vasp
mpif90 -o vasp main.o base.o mpi.o smart_allocate.o xml.o constant.o jacobi.o main_mpi.o scala.o asa.o lattice.o poscar.o ini.o setex.o radial.o pseudo.o mgrid.o mkpoints.o wave.o wave_mpi.o symmetry.o symlib.o lattlib.o random.o nonl.o nonlr.o dfast.o choleski2.o mix.o charge.o xcgrad.o xcspin.o potex1.o potex2.o metagga.o constrmag.o pot.o cl_shift.o force.o dos.o elf.o tet.o hamil.o steep.o chain.o dyna.o relativistic.o LDApU.o sphpro.o paw.o us.o ebs.o wavpre.o wavpre_noio.o broyden.o dynbr.o rmm-diis.o reader.o writer.o tutor.o xml_writer.o brent.o stufak.o fileio.o opergrid.o stepver.o dipol.o xclib.o chgloc.o subrot.o optreal.o davidson.o edtest.o electron.o shm.o pardens.o paircorrection.o optics.o constr_cell_relax.o stm.o finite_diff.o elpol.o setlocalpp.o fftmpiw.o fftmpi_map.o fft3dlib.o /home/inflames/lib/lib/libfftw3.a -L../vasp.4.lib -ldmy ../vasp.4.lib/linpack_double.o ../vasp.4.lib/lapack_double.o /home/inflames/lib/blas_LINUX.a
/usr/bin/ld: cannot open main.o: No such file or directory
make: *** [vasp] Error 2


Why all "permission denied" massages are appeare??
and What is the meaning of the final error??

Though I'm a starter, I think these errors are not significant. Probably just due to some mishandled makefiles or settings.

Please check the errors and let me know what was wrong.

[pavel]

These errors are significant: preprocessing and compilation failed.
Try to change to vasp directory and run commands

Code: Select all

ls -l ./preprocess
chmod u+x ./preprocess
ls -l ./preprocess

If sucessful you will see that permission to execute was changed. Then try to run make once again.

[neogien]

Thank you!! Mr. Pavel.
Permission problems are probably solved.
However, there are still some problems as follows.


./preprocess <base.F | /usr/bin/cpp -P -C -traditional >base.f90 -DMPI -DHOST=\"LinuxIFC\" -DIFC -Dkind8 -DNGZhalf -DCACHE_SIZE=4000 -DPGF90 -Davoidalloc -DMPI_BLOCK=500
mpif90 -O3 -c base.f90
./preprocess <mpi.F | /usr/bin/cpp -P -C -traditional >mpi.f90 -DMPI -DHOST=\"LinuxIFC\" -DIFC -Dkind8 -DNGZhalf -DCACHE_SIZE=4000 -DPGF90 -Davoidalloc -DMPI_BLOCK=500
mpif90 -O3 -c mpi.f90
./preprocess <smart_allocate.F | /usr/bin/cpp -P -C -traditional >smart_allocate.f90 -DMPI -DHOST=\"LinuxIFC\" -DIFC -Dkind8 -DNGZhalf -DCACHE_SIZE=4000 -DPGF90 -Davoidalloc -DMPI_BLOCK=500
mpif90 -O3 -c smart_allocate.f90
./preprocess <xml.F | /usr/bin/cpp -P -C -traditional >xml.f90 -DMPI -DHOST=\"LinuxIFC\" -DIFC -Dkind8 -DNGZhalf -DCACHE_SIZE=4000 -DPGF90 -Davoidalloc -DMPI_BLOCK=500
mpif90 -O3 -c xml.f90
PGF90-S-0034-Syntax error at or near end of line (xml.f90: 1545)
PGF90/any Linux/x86 5.2-4: compilation completed with severe errors
make: *** [xml.o] Error 2

I wonder it is due to my poor base on the Linux system.
Can it be solved easily? or Should I ask advice of my machine concultant?

[admin]

please have a look at line 1545 of xml.f90. I am not aware that this ever caused compilation problems. Please check if the pre-compiler produced a reasonable .f90 file