PENALTYPOT: Difference between revisions
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<math>x_1 x_2 ... x_m h w </math> | <math>x_1 x_2 ... x_m h w </math> | ||
where <math>x_1</math> to <math>x_m</math> stand for the position in the space of active coordinates, and <math>h</math> and <math>w</math> are the height and width of the Gaussian, respectively (note that both positive and negative values are allowed for the parameter <math>h</math>). For example, if two active coordinates with | where <math>x_1</math> to <math>x_m</math> stand for the position in the space of active coordinates, and <math>h</math> and <math>w</math> are the height and width of the Gaussian, respectively (note that both positive and negative values are allowed for the parameter <math>h</math>). For example, if two active coordinates with <code>STATUS=5</code> are defined in the {{TAG|ICONST}} file: | ||
R 1 5 5 | R 1 5 5 | ||
R 1 6 5 | R 1 6 5 |
Revision as of 11:18, 7 October 2022
At the beginning of each metadynamics simulation, VASP attempts to read the file PENALTYPOT containing the bias potential acting on the geometric parameters with STATUS=5 defined in the ICONST file. In analogy to the time-dependent bias potential generated in metadynamics, the bias potential is defined as a superposition of Gaussian hills. Each line in the PENALTYPOT file represents one (multidimensional) Gaussian:
[math]\displaystyle{ x_1 x_2 ... x_m h w }[/math]
where [math]\displaystyle{ x_1 }[/math] to [math]\displaystyle{ x_m }[/math] stand for the position in the space of active coordinates, and [math]\displaystyle{ h }[/math] and [math]\displaystyle{ w }[/math] are the height and width of the Gaussian, respectively (note that both positive and negative values are allowed for the parameter [math]\displaystyle{ h }[/math]). For example, if two active coordinates with STATUS=5
are defined in the ICONST file:
R 1 5 5 R 1 6 5
then each line in the PENALTYPOT must contain four items. The bias potential is defined in the following lines:
1.6 0.8 1.0 0.2 1.6 1.0 1.0 0.2 1.6 1.2 1.0 0.2 1.6 1.4 1.0 0.2 1.6 1.6 1.0 0.2 1.6 1.8 1.0 0.2 1.6 2.0 1.0 0.2