Phonons from finite differences
First of all to run a phonon calculation, a sufficiently large super cell is needed.
The phonon calculations are simply carried out by setting IBRION=5 or IBRION=6 in the INCAR file. IBRION=5, is available as of VASP.4.5, IBRION=6 starting from VASP.5.1. Both flags allow to determine the Hessian matrix (matrix of the second derivatives of the energy with respect to atomic displacements) and the vibrational frequencies of a system.
Important: Only zone-center (Γ-point) frequencies are calculated.
To calculate the Hessian matrix, finite differences are used, i.e. each ion is displaced in each independent direction, and from the forces the Hessian matrix is determined. The two modes differ in the way symmetry is considered. For IBRION=5, all atoms are displaced in all three Cartesian directions, resulting in a significant computational effort even for moderately sized high-symmetry systems. For IBRION=6, only symmetry inequivalent displacements are considered, and the remainder of the Hessian matrix is filled using symmetry operations.
Three parameters influence the determination of the Hessian matrix: The parameter NFREE determines how many displacements are used for each direction and ion, and POTIM determines the step size. The step size is defaulted to 0.015 Å (starting from VASP.5.1), if too large values are supplied in the input file. Expertise shows that this is a very reasonable compromise.
NFREE=2 uses central differences, i.e., each ion is displaced by a small positive and negative displacement, ±POTIM, along each of the Cartesian directions. For NFREE=4, four displacement along each of the Cartesian directions are used: ±POTIM and ±2×POTIM.
The main output is written to the OUTCAR file and starts with the following lines:
Eigenvectors and eigenvalues of the dynamical matrix ----------------------------------------------------
The following lines are repeated for each normal mode and a should look like the following example output:
1 f = 14.329944 THz 90.037693 2PiTHz 477.995462 cm-1 59.263905 meV X Y Z dx dy dz 0.000000 0.000000 0.000000 0.009046 -0.082007 -0.006117 0.000000 2.731250 2.731250 0.009046 0.106244 0.006563 0.000000 5.462500 5.462500 0.009046 0.082007 0.006117 0.000000 8.193750 8.193750 0.009046 -0.106244 -0.006563 ... 2 f = 14.329944 THz 90.037693 2PiTHz 477.995462 cm-1 59.263905 meV X Y Z dx dy dz 0.000000 0.000000 0.000000 0.003458 0.021825 -0.093181 0.000000 2.731250 2.731250 0.003458 0.005416 0.094689 0.000000 5.462500 5.462500 0.003458 -0.021825 0.093181 0.000000 8.193750 8.193750 0.003458 -0.005416 -0.094689 ... ...
The first number is the number for the normal mode. If it is followed by f, it is a mode on the real axis (vibrationally stable). Otherwise if it is followed by f/i, the mode is an imaginary mode ("soft mode"). The following entries are just the eigenfrequency of the mode in different units.
The following column is the label for the atomic positions in Cartesian coordinates (x,y,z) and the normalized eigenvectors of the eigenmodes in direct coordinates.
There should be 3 normal modes, where is the number of atoms in the super cell (POSCAR). The modes are ordered in descending order with respect to the eigenfrequency. The last three modes are the translational modes (they are usually disregarded).
To get the phonon frequencies quickly on the command line simply type the following:
grep THz OUTCAR