Category:Interface pinning: Difference between revisions

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Use '''interface pinning''' to determine the melting point from a [[:Category: Molecular dynamics|molecular-dynamics]] simulation of the interface of a liquid and a solid phase.  
'''Interface pinning'''{{cite|pedersen:prb:13}} is used to determine the melting point from a [[:Category: Molecular dynamics|molecular-dynamics]] simulation of the interface between a liquid and a solid phase.  
<!-- == Theory == -->
<!-- == Theory == -->
Because the typical behavior of such a simulation is to freeze or melt, the interface is ''pinned'' with a bias potential.
The typical behavior of such a simulation is to freeze or melt, while the interface is ''pinned'' with a bias potential.
This potential applies an energy penalty for deviations from the desired two-phase system.
This potential applies an energy penalty for deviations from the desired two-phase system.
Prefer simulating above the melting point because the bias potential prevents melting better than freezing.
It is preferred simulating above the melting point because the bias potential prevents melting better than freezing.


The Steinhardt-Nelson order parameter <math>Q_6</math> discriminates between the solid and the liquid phase.
The Steinhardt-Nelson{{cite|steinhardt:prb:83}} order parameter <math>Q_6</math> discriminates between the solid and the liquid phase.
With the bias potential
With the bias potential


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Under the action of the bias potential, the system equilibrates to the desired two-phase configuration.
Under the action of the bias potential, the system equilibrates to the desired two-phase configuration.
An important observable is the difference between the average order parameter <math>\langle Q_6 \rangle</math> in equilibrium and the desired order parameter <math>A</math>.
An important observable is the difference between the average order parameter <math>\langle Q_6\rangle</math> in equilibrium and the desired order parameter <math>A</math>.
This difference relates to the the chemical potentials of the solid <math>\mu_\text{solid}</math> and the liquid <math>\mu_\text{liquid}</math> phase
This difference relates to the the chemical potentials of the solid <math>\mu_\text{solid}</math> and the liquid <math>\mu_\text{liquid}</math> phase


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Computing the forces requires a differentiable <math>Q_6(\mathbf{R})</math>.
Computing the forces requires a differentiable <math>Q_6(\mathbf{R})</math>.
<!-- PLEASE REPHRASE - I did not understand this part and how it relates to Q_6(R) -->
<!-- PLEASE REPHRASE - I did not understand this part and how it relates to Q_6(R) -->
We use a smooth fading function <math>w(r)</math> to weight each pair of atoms at distance <math>r</math> for the calculation of the <math>Q_6</math> order parameter
In the VASP implementation a smooth fading function <math>w(r)</math> is used to weight each pair of atoms at distance <math>r</math> for the calculation of the <math>Q_6(\mathbf{R},w)</math> order parameter. This fading function is given as


:<math> w(r) = \left\{ \begin{array}{cl} 1  &\textrm{for} \,\, r\leq n \\
:<math> w(r) = \left\{ \begin{array}{cl} 1  &\textrm{for} \,\, r\leq n \\
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<!-- is w(r) equivalent to (1 - t)^2(1 + 2t) with t = (r - n) / (f - n)? -->
<!-- is w(r) equivalent to (1 - t)^2(1 + 2t) with t = (r - n) / (f - n)? -->


Here <math>n</math> and <math>f</math> are the near- and far-fading distances given in the {{TAG|INCAR}} file respectively.  
Here <math>n</math> and <math>f</math> are the near- and far-fading distances, respectively.  
<!-- END REPHRASE -->
<!-- END REPHRASE -->
The radial distribution function <math>g(r)</math> of the crystal phase yields a good choice for the fading range.
The radial distribution function <math>g(r)</math> of the crystal phase yields a good choice for the fading range.
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'''Interface pinning''' uses the <math>Np_zT</math> ensemble where the barostat only acts along the <math>z</math> direction.
'''Interface pinning''' uses the <math>Np_zT</math> ensemble where the barostat only acts along the <math>z</math> direction.
This uses a Langevin thermostat and a Parrinello-Rahman barostat with lattice constraints in the remaining two dimensions.
This ensemble uses a Langevin thermostat and a Parrinello-Rahman barostat with lattice constraints in the remaining two dimensions.
The solid-liquid interface must be in the <math>x-y</math> plane perpendicular to the action of the barostat.
The solid-liquid interface must be in the <math>x</math>-<math>y</math> plane perpendicular to the action of the barostat.


Set the following tags for the '''interface pinning''' method:
Set the following tags for the '''interface pinning''' method:
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;{{TAG|OFIELD_A}}: Defines the desired value of the order parameter <math>A</math>.
;{{TAG|OFIELD_A}}: Defines the desired value of the order parameter <math>A</math>.


The following is a sample {{TAG|INCAR}} file for interface pinning of sodium{{cite|pedersen:prb:13}}:
The following example {{TAG|INCAR}} file calculates the interface pinning in sodium{{cite|pedersen:prb:13}}:
  {{TAGBL|TEBEG}} = 400                  # temperature in K
  {{TAGBL|TEBEG}} = 400                  # temperature in K
  {{TAGBL|POTIM}} = 4                    # timestep in fs
  {{TAGBL|POTIM}} = 4                    # timestep in fs
  {{TAGBL|IBRION}} = 0                    # do MD
  {{TAGBL|IBRION}} = 0                    # run molecular dynamics
  {{TAGBL|ISIF}} = 3                      # use Parrinello-Rahman barostat for the lattice
  {{TAGBL|ISIF}} = 3                      # use Parrinello-Rahman barostat for the lattice
  {{TAGBL|MDALGO}} = 3                    # use Langevin thermostat
  {{TAGBL|MDALGO}} = 3                    # use Langevin thermostat
  {{TAGBL|LANGEVIN_GAMMA}} = 1.0         # friction coef. for atomic DoFs for each species
  {{TAGBL|LANGEVIN_GAMMA_L}} = 3.0       # friction coefficient for the lattice degree of freedoms (DoF)
  {{TAGBL|LANGEVIN_GAMMA_L}} = 3.0       # friction coef. for the lattice DoFs
  {{TAGBL|LANGEVIN_GAMMA}} = 1.0         # friction coefficient for atomic DoFs for each species
  {{TAGBL|PMASS}} = 100                  # mass for lattice DoFs
  {{TAGBL|PMASS}} = 100                  # mass for lattice DoFs
  {{TAGBL|LATTICE_CONSTRAINTS}} = F F T  # fix x&y, release z lattice dynamics
  {{TAGBL|LATTICE_CONSTRAINTS}} = F F T  # fix x-y plane, release z lattice dynamics
  {{TAGBL|OFIELD_Q6_NEAR}} = 3.22        # fading distances for computing a continuous Q6
  {{TAGBL|OFIELD_Q6_NEAR}} = 3.22        # near fading distance for function w(r) in Angstrom
  {{TAGBL|OFIELD_Q6_FAR}} = 4.384        # in Angstrom
  {{TAGBL|OFIELD_Q6_FAR}} = 4.384        # far fading distance for function w(r) in Angstrom
  {{TAGBL|OFIELD_KAPPA}} = 500            # strength of bias potential in eV/(unit of Q)^2
  {{TAGBL|OFIELD_KAPPA}} = 500            # strength of bias potential in eV/(unit of Q)^2
  {{TAGBL|OFIELD_A}} = 0.15              # desired value of the Q6 order parameter
  {{TAGBL|OFIELD_A}} = 0.15              # desired value of the Q6 order parameter
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[[The_VASP_Manual|Contents]]


[[Category:VASP|Interface Pinning]][[Category:Molecular Dynamics]]
[[Category:VASP|Interface pinning]][[Category:Molecular dynamics]]

Latest revision as of 10:25, 18 October 2023

Interface pinning[1] is used to determine the melting point from a molecular-dynamics simulation of the interface between a liquid and a solid phase. The typical behavior of such a simulation is to freeze or melt, while the interface is pinned with a bias potential. This potential applies an energy penalty for deviations from the desired two-phase system. It is preferred simulating above the melting point because the bias potential prevents melting better than freezing.

The Steinhardt-Nelson[2] order parameter discriminates between the solid and the liquid phase. With the bias potential

penalizes differences between the order parameter for the current configuration and the one for the desired interface . is an adjustable parameter determining the strength of the pinning.

Under the action of the bias potential, the system equilibrates to the desired two-phase configuration. An important observable is the difference between the average order parameter in equilibrium and the desired order parameter . This difference relates to the the chemical potentials of the solid and the liquid phase

where is the number of atoms in the simulation.

Computing the forces requires a differentiable . In the VASP implementation a smooth fading function is used to weight each pair of atoms at distance for the calculation of the order parameter. This fading function is given as


Here and are the near- and far-fading distances, respectively. The radial distribution function of the crystal phase yields a good choice for the fading range. To prevent spurious stress, should be small where the derivative of is large. Set the near fading distance to the distance where goes below 1 after the first peak. Set the far fading distance to the distance where goes above 1 again before the second peak.

How to

Interface pinning uses the ensemble where the barostat only acts along the direction. This ensemble uses a Langevin thermostat and a Parrinello-Rahman barostat with lattice constraints in the remaining two dimensions. The solid-liquid interface must be in the - plane perpendicular to the action of the barostat.

Set the following tags for the interface pinning method:

OFIELD_Q6_NEAR
Defines the near-fading distance .
OFIELD_Q6_FAR
Defines the far-fading distance .
OFIELD_KAPPA
Defines the coupling strength of the bias potential.
OFIELD_A
Defines the desired value of the order parameter .

The following example INCAR file calculates the interface pinning in sodium[1]:

TEBEG = 400                   # temperature in K
POTIM = 4                     # timestep in fs
IBRION = 0                    # run molecular dynamics
ISIF = 3                      # use Parrinello-Rahman barostat for the lattice
MDALGO = 3                    # use Langevin thermostat
LANGEVIN_GAMMA_L = 3.0        # friction coefficient for the lattice degree of freedoms (DoF)
LANGEVIN_GAMMA = 1.0          # friction coefficient for atomic DoFs for each species
PMASS = 100                   # mass for lattice DoFs
LATTICE_CONSTRAINTS = F F T   # fix x-y plane, release z lattice dynamics
OFIELD_Q6_NEAR = 3.22         # near fading distance for function w(r) in Angstrom
OFIELD_Q6_FAR = 4.384         # far fading distance for function w(r) in Angstrom
OFIELD_KAPPA = 500            # strength of bias potential in eV/(unit of Q)^2
OFIELD_A = 0.15               # desired value of the Q6 order parameter

References



Pages in category "Interface pinning"

The following 4 pages are in this category, out of 4 total.